That will repair no problem. Once the repair is filled, its just a case of flatting back then polishing to a gloss to match the rest.

Warren Penalver
Easy Composites / Carbon Mods - Technical Support Assistant

Repair it mate, like Warren says its cut out, fill,sand then polish.

You will regret it as the marks will be in the part and its a real ball to work after.

I went to my local paint supplies and got a Velcro foam polishing kit that fits a rechargeable hand drill, they are cheap and very easy to use, add to that a medium compound polish and you will be amazed how good you can get the mould to look.

Thanks gents...looks like I will be spending some time on minor repairs.

If you take a look at the last picture I posted on my bike build you will see a mould done using the uni mould system, ive polished the in part piece and left the outside as was, you can see the difference between the two parts is quite pronounced and was done in half an hour with the drill and foam mop, very easy to do and well worth it.

Definitely worth repairing, especially given it is a large flat surface. Will only take 20 minutes of sanding to get it perfect. 

These are very small, shallow surface imperfections in confined areas...

Nah use a scalpel to pick away any loose bits and just scratch up the imperfections. Then use a pop stick to dab the gelcoat into the low areas. Remember to fill them proud of the surface so you can sand it down level. 

Yeh it'll be fine. Scratch it up well, it's just easier than trying to sand inside the alligatoring. Make sure it's clean.