I already posted about my carbon fiber helicopter boom, for that I decided I'll bite the bullet and do alloy molds. 
I also need a carbon fiber helicopter canopy. Similar shape to a football but a bit bigger and open at the back, I'll attach a pic of one. It will have pretty thin wall thickness, generally they are about a half mm, maybe .6 or .7. So only a couple layers of weave. 
I will be making my own design on fusion 360 and milling the plug on my cnc. The process that makes the most sense to me is milling each plug half (mold will be split down the middle lengthwise, right and left half) out of mdf or foam, spraying it with layers of duratec primer, sand and polish, then attach each plug half to a flat sheet of melamine or some other rigid plastic to create base for mold flanges and proceed to make fiberglass mold halves from that. I would prefer to skip the plug stage and go straight to milling the molds, but it just doesn't seem to work out as well as making fiberglass molds from a plug.  From the female molds I will vacuum bag a carbon fiber wet lay up. 
does this sound like a good plan or is there an easier/better way considering I have a cnc? Another variation would be attaching the 2 plug halves together to make a complete plug before applying duratec,  then split into 2 molds using the method shown in the air box video, but i feel that it will be less work to just attach the 2 halves to flat sheets for making the molds, just need to make sure both sheets are perfectly flat planes. 

Check the data sheet of your epoxy. If its mixed viscosity at 25C is above 500cps then I wouldn't use it. 500 is thick for infusion but will work for small parts. Under 300cps is ideal.

Don't worry about the resin flow, on a small simple part like this it isn't going to be a concern. Flow issues tend to be associated with complex geometry and larger parts where your pot life may be on the edge. Realistically, you can just mix up a bit extra resin and allow some to flow into your catch pot until everything has wet out. Worst case, a brake zone will ensure you aren't wasting too much resin.